This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ALV2.1

Display Name: China/LOC_001ALV2.1/2023-11-28
X. Qiu

Sample details

Collection date
2023-11-28
Collection date (lower bound)
2023-11-28
Collection date (upper bound)
2023-11-28
Earliest release date
2024-08-20
Collection country
China
Isolate name
B1193/Hangzhou/CHN/2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-17 08:59insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hangzhou Center for Disease Control and Prevention, Microbiology Laboratory

INSDC

NCBI release date
2024-08-20
NCBI update date
2024-08-20
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
315
Total SNPs
74
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
4.25%
Total stop codons
0

Submission details

Submission ID
PQ124018.1
Submitting group
Date submitted
2025-12-17 08:59:52 UTC
Date released
2025-12-17 09:24:55 UTC

Clade

Clade CV-A10
C

Genotype

Genotype
CV-A10

Files

Annotations

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • C2585T
  • A2586G
  • A2589G
  • C2591T
  • T2592G
  • A2595T
  • T2604C
  • C2607T
  • T2610C
  • A2628C
  • A2631G
  • G2634C
  • G2637T
  • C2643G
  • A2644G
  • G2646T
  • C2649T
  • A2658G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the AY421767.1 reference

    Substitutions

    VP1

  • VP1:A50V
  • VP1:T52M
  • VP1:M70V
  • VP1:A78T
  • VP1:S81N
  • VP1:V107T
  • VP1:F148Y
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue